Stem-loop bdi-MIR5199

Accession

MI0018231

Description

Brachypodium distachyon bdi-MIR5199 precursor miRNA

Sequence

auacuuaaaacgcuuagagaugggcaaagugcuaucaauuguuugaacaaacuuugcccagucuacgacauugacucgaaccugauugcugaguuUGUUCAUACGGUUGAUAGCACuuagcccaucucuaaacaguuuacguau
((((.((((....((((((((((((.((((((((((((((((.(((((((((((.((.(((....(((.......)))...)))...)).))))))))))).)))))))))))))))).))))))))))))....)))).))))

Structure

    u    acgc            a                u           u  --c   ucua   ca 
auac uaaa    uuagagaugggc aagugcuaucaauugu ugaacaaacuu gc   cag    cga  u
|||| ||||    |||||||||||| |||||||||||||||| ||||||||||| ||   |||    |||  u
uaug auuu    aaucucuacccg uuCACGAUAGUUGGCA ACUUGUuugag cg   guc    gcu  g
    c    gaca            a                U           u  uua   -caa   ca 

Annotation confidence Not enough data

Genome context

1: 42791417-42791560 [-]

Mature bdi-miR5199

• Accession: MIMAT0020756
• Description: Brachypodium distachyon bdi-miR5199 mature miRNA
• Sequence: 96 - UGUUCAUACGGUUGAUAGCAC - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449