Stem-loop bdi-MIR529

Accession

MI0018229

Description

Brachypodium distachyon bdi-MIR529 precursor miRNA

Gene family

MIPF0000388; MIR529

Literature search

2 open access papers mention bdi-MIR529
(19 sentences)

Sequence

cgucaagguuaaagggAGAAGAGAGAGAGUACAGCCUuaauuaagcucgaucgaucugucuuguaucaagGCUGUACCCUCUCUCUUCUUCucuuagcuucuugaug
((((((((((((.((((((((((((((.((((((((((.(((((((...........).)))).)).)))))))))).)))))))))))))).)))))..)))))))

Structure

       --     a              A          a  -    - ucga 
cgucaag  guuaa gggAGAAGAGAGAG GUACAGCCUu au uaag c    u
|||||||  ||||| |||||||||||||| |||||||||| || |||| |    c
guaguuc  cgauu uCUUCUUCUCUCUC CAUGUCGgaa ua guuc g    g
       uu     c              C          c  u    u ucua 

Annotation confidence Not enough data

Genome context

3: 44898509-44898615 [+]

Mature bdi-miR529-5p

• Accession: MIMAT0020754
• Description: Brachypodium distachyon bdi-miR529-5p mature miRNA
• Sequence: 17 - AGAAGAGAGAGAGUACAGCCU - 37
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR529-3p

• Accession: MIMAT0027097
• Description: Brachypodium distachyon bdi-miR529-3p mature miRNA
• Sequence: 71 - GCUGUACCCUCUCUCUUCUUC - 91
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443