Stem-loop sequence bdi-MIR529

Accession

MI0018229 (change log)

Description

Brachypodium distachyon miR529 stem-loop

Gene family

MIPF0000388; MIR529

Literature search

2 open access papers mention bdi-MIR529
(19 sentences)

Stem-loop

          --     ag             a          a  -    cuc  u 
5' cgucaag  guuaa  ggagaagagagag guacagccuu au uaag   ga c
   |||||||  |||||  ||||||||||||| |||||||||| || ||||   ||  
3' guaguuc  cgauu  cuucuucucucuc caugucggaa ua guuc   cu g
          uu     cu             c          c  u    ugu  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 44898509-44898615 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018229

Mature sequence bdi-miR529-5p

• Accession: MIMAT0020754
• Sequence: 17 - agaagagagagaguacagccu - 37
• Evidence: experimental; Illumina [1-2]

Mature sequence bdi-miR529-3p

• Accession: MIMAT0027097
• Sequence: 71 - gcuguacccucucucuucuuc - 91
• Evidence: experimental; Illumina [2]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).