Stem-loop sequence bdi-MIR395n

Accession

MI0018227 (change log)

Description

Brachypodium distachyon miR395n stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395n
(32 sentences)

Stem-loop

   u   au     u         g            c  -  a  ac 
5'  ggu  uacca gaguucccu caagcacuucac au gc cu  c
    |||  ||||| ||||||||| |||||||||||| || || ||   
3'  cca  guggu cucaagggg guuugugaagug ua cg ga  c
   a   cu     u         -            u  u  g  ac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 25457116-25457205 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR395n

• bdi-MIR395e: 5: 25455195-25455344 [+]
• bdi-MIR395f: 5: 25455426-25455521 [+]
• bdi-MIR395g: 5: 25455723-25455811 [+]
• bdi-MIR395h: 5: 25455882-25455957 [+]
• bdi-MIR395c: 5: 25455997-25456122 [+]
• bdi-MIR395j: 5: 25456151-25456238 [+]
• bdi-MIR395k: 5: 25456290-25456375 [+]
• bdi-MIR395p: 5: 25456430-25456518 [+]
• bdi-MIR395l: 5: 25456562-25456657 [+]
• bdi-MIR395q: 5: 25456843-25456926 [+]
• bdi-MIR395n: 5: 25457116-25457205 [+]

Database links

• miRBase Tracker:MI0018227

Mature sequence bdi-miR395n-5p

• Accession: MIMAT0027096
• Sequence: 15 - guucccugcaagcacuucacc - 35
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR395n-3p

• Accession: MIMAT0020752
• Sequence: 59 - ugaaguguuugggggaacuc - 78
• Evidence: experimental; Illumina [1-2]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).