miRBase entry: bdi-MIR395f

Stem-loop bdi-MIR395f


Accession
MI0018221
Description
Brachypodium distachyon bdi-MIR395f precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention bdi-MIR395f
(33 sentences)

Sequence

guuugguguccccgggaGUUCCCUUCAAACACUUUACGaagcaucuuucuaagacuauuugUGAAGUGUUUGGGGGAACUCucggugucaccaagc
((((((((.(.(((((((((((((.(((((((((((((((...((((...))))...)))))))))))))))))))))))))))).).))))))))

Structure
        u c             U               gca    u 
guuuggug c ccgggaGUUCCCU CAAACACUUUACGaa   ucuu  
|||||||| | ||||||||||||| |||||||||||||||   |||| c
cgaaccac g ggcuCUCAAGGGG GUUUGUGAAGUguuu   agaa  
        u u             -               auc    u 


Annotation confidence Not enough data
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Genome context
5: 25455426-25455521 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from bdi-MIR395f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR395f-3p

Accession MIMAT0020746
Description Brachypodium distachyon bdi-miR395f-3p mature miRNA
Sequence 62 - UGAAGUGUUUGGGGGAACUC - 81
Evidence experimental
Illumina [1-2]

Mature bdi-miR395f-5p

Accession MIMAT0027090
Description Brachypodium distachyon bdi-miR395f-5p mature miRNA
Sequence 18 - GUUCCCUUCAAACACUUUACG - 38
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443