Stem-loop bdi-MIR164f

Accession

MI0018216

Description

Brachypodium distachyon bdi-MIR164f precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

3 open access papers mention bdi-MIR164f
(17 sentences)

Sequence

aggcgaggcuugcgcggUGGAGAAGAAGGGCACAUGCAugcacacacacgcgcauggccggccgcucgggcgacacgcgcgcccaggccgcggcgcggcacaccggcggcgagcuggaacgaaugcacgugcccugcuucuccaccucgcgcgccucgccu
(((((((((.((((.((((((((((.(((((((.(((((((.(......).)).((((((((((((((((((.(....)))))).))..))))).)))).))(((((.....))))).....))))).))))))).)))))))))).)))).)))))))))

Structure

         u    c          A       A     -----gcacacacacgcgca  -    -     --  -     a a 
aggcgaggc ugcg ggUGGAGAAG AGGGCAC UGCAu                    ug gccg gccgc  uc gggcg c c
||||||||| |||| |||||||||| ||||||| |||||                    || |||| |||||  || ||||| |  
uccgcuccg gcgc ccaccucuuc ucccgug acgua                    ac cggc cggcg  gg cccgc g g
         c    u          g       c     agcaaggucgagcggcggcc  a    g     cc  a     - c 

Annotation confidence Not enough data

Genome context

2: 19949341-19949501 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR164f

Mature bdi-miR164f

• Accession: MIMAT0020741
• Description: Brachypodium distachyon bdi-miR164f mature miRNA
• Sequence: 18 - UGGAGAAGAAGGGCACAUGCA - 38
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449