Stem-loop sequence bdi-MIR164e

Accession

MI0018215 (change log)

Description

Brachypodium distachyon miR164e stem-loop

Gene family

MIPF0000045; MIR164

Literature search

3 open access papers mention bdi-MIR164e
(17 sentences)

Stem-loop

   u        u   cc  u        ca    a      --aa    g a      uu     g 
5'  ggugagaa gcc  ug uggagaag  gggc cgugca    gauc g gcacgu  cguau u
    |||||||| |||  || ||||||||  |||| ||||||    |||| | ||||||  ||||| g
3'  ccauucuu cgg  ac accucuuc  cucg gcacgu    cuag u cgugua  gcaug a
   a        c   -u  c        cc    c      gucg    g a      -u     u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 2: 26808982-26809108 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018215

Mature sequence bdi-miR164e

• Accession: MIMAT0020740
• Sequence: 19 - uggagaagcagggcacgugca - 39
• Evidence: experimental; Illumina [1]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).