Stem-loop sequence bdi-MIR162

Accession

MI0018213 (change log)

Description

Brachypodium distachyon miR162 stem-loop

Gene family

MIPF0000169; MIR162_2

Literature search

2 open access papers mention bdi-MIR162
(28 sentences)

Stem-loop

   gc    gc    u            cu     ugccuugugcuacugauccugggccgggcggcg 
5'   cugg  gcag gguuuaucgauc  uuccc                                 a
     ||||  |||| ||||||||||||  |||||                                 u
3'   ggcc  cguc ccaaauagcuag  aaggg                                 u
   uu    ua    u            cu     cguauucgacacuguucuucuuuuuuucauagg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 49592002-49592134 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018213

Mature sequence bdi-miR162

• Accession: MIMAT0020738
• Sequence: 111 - ucgauaaaccucugcauccgg - 131
• Evidence: experimental; Illumina [1]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).