Stem-loop bdi-MIR162

Accession

MI0018213

Description

Brachypodium distachyon bdi-MIR162 precursor miRNA

Gene family

MIPF0000169; MIR162_2

Literature search

2 open access papers mention bdi-MIR162
(28 sentences)

Sequence

gccugggcgcagugguuuaucgauccuuucccugccuugugcuacugauccugggccgggcggcgauuggauacuuuuuuucuucuugucacagcuuaugcgggaaucgaUCGAUAAACCUCUGCAUCCGGuu
..(((((.((((.((((((((((((..(((((.((((.((.(..........).)).))))(((((..(((.........)))..)))))...((....)))))))..)))))))))))).)))).)))))..

Structure

gc     c    u            cu     ugccuugugcuacugauccugggccgggc     uu   uac 
  cuggg gcag gguuuaucgauc  uuccc                             ggcga  gga   u
  ||||| |||| ||||||||||||  |||||                             |||||  |||   u
  GGCCU CGUC CCAAAUAGCUag  aaggg                             cuguu  ucu   u
uu     A    U            cu     ------------------cguauucgaca     cu   uuu 

Annotation confidence Not enough data

Genome context

3: 49592002-49592134 [+]

Mature bdi-miR162

• Accession: MIMAT0020738
• Description: Brachypodium distachyon bdi-miR162 mature miRNA
• Sequence: 111 - UCGAUAAACCUCUGCAUCCGG - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449