Stem-loop sequence bdi-MIR5185a

AccessionMI0018158 (change log)
DescriptionBrachypodium distachyon miR5185a stem-loop
Gene family MIPF0001246; MIR5185
Literature search

1 open access papers mention bdi-MIR5185a
(1 sentences)

Stem-loop 
   ----------------         u g     a                      u                     a    g 
5'                 ggugcaaac g auccc cgaaagucccguuucuaguuca uuuucaaaucuucuauucaaa uuuu c
                   ||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||  
3'                 ccacguuug c uaggg gcuuucagggcgaagaucaagu aagaguuuagaggauaaguuu aaaa u
   aguucaauuuuaauuc         c g     c                      u                     -    c
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Bd21; GCA_000005505.1) Overlapping transcripts
2: 41735710-41735862 [+]
intergenic
Database links

Mature sequence bdi-miR5185a-5p

Accession MIMAT0020734
Sequence

31 -  

uucuaguucauuuuucaaauc

 - 51

Get sequence
Evidence experimental; Illumina [2]

Mature sequence bdi-miR5185a-3p

Accession MIMAT0027086
Sequence

89 -  

uuugagaauugaacuagaagc

 - 109

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2
PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).