Stem-loop sequence bdi-MIR5183

Accession

MI0018156 (change log)

Description

Brachypodium distachyon miR5183 stem-loop

Gene family

MIPF0000382; MIR1122

Literature search

1 open access papers mention bdi-MIR5183
(1 sentences)

Stem-loop

   ccugccag      g    auaaa   -   c  c           g   --     auauuuuauguaucuauacguuuuuu 
5'         gauaug uuug     ugc auc uc gauucuaaauu uug  ucgaa                          a
           |||||| ||||     ||| ||| || ||||||||||| |||  |||||                          a
3'         cuauau aaac     aug uag ag cuaagauuuga aac  aguuu                          g
   --------      -    ----g   a   -  a           g   ug     aaacagguuuauaccugcaucgauaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 2: 46665653-46665804 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018156

Mature sequence bdi-miR5183

• Accession: MIMAT0020732
• Sequence: 98 - uauuuggacaaauuugaguca - 118
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).