miRBase entry: bdi-MIR5183

Stem-loop bdi-MIR5183


Accession
MI0018156
Description
Brachypodium distachyon bdi-MIR5183 precursor miRNA
Gene family
MIPF0000382; MIR1122

Literature search
1 open access papers mention bdi-MIR5183
(1 sentences)

Sequence

ccugccaggauaugguuugauaaaugcauccuccgauucuaaauuguugucgaaauauuuuauguaucuauacguuuuuuaagaauagcuacguccaUAUUUGGACAAAUUUGAGUCAagaguuuagaaucagagauaguagcaaauauauc
...((((.....))))........(((((.(((.(((((((((((.((((((((.........(((.((((.(.........).)))).)))(((((....)))))...)))))..))).))))))))))).)))...)).)))........

Structure
ccugccaggauaugguuugauaaa   -  --c   c           g   --     auauuuuauguaucuauacguuuuuuaagaauagcuac     U 
                        ugc au   cuc gauucuaaauu uug  ucgaa                                      gucca A
                        ||| ||   ||| ||||||||||| |||  |||||                                      |||||  
                        acg ug   gag cuaagauuuga aAC  AGUUU                                      CAGGU U
----------------cuauauaa   a  aua   a           g   UG     -----------------------------------AAA     U 


Annotation confidence Not enough data
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Genome context
2: 46665653-46665804 [-]

Database links

Mature bdi-miR5183

Accession MIMAT0020732
Description Brachypodium distachyon bdi-miR5183 mature miRNA
Sequence 98 - UAUUUGGACAAAUUUGAGUCA - 118
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293