miRBase entry: bdi-MIR5180a

Stem-loop bdi-MIR5180a


Accession
MI0018153
Description
Brachypodium distachyon bdi-MIR5180a precursor miRNA
Gene family
MIPF0001200; MIR5067

Literature search
2 open access papers mention bdi-MIR5180a
(2 sentences)

Sequence

uuagugaaaaccuauaacuacuacucccucugauccaaaaUAAGUGUCUCAGUUUUGAACUaagccuaguucaagucuaguucaaaacugcgacacuuauuuuggaucagagguaguagauaacugcauaugugcuugcu
.((((...........))))(((((.((((((((((((((((((((((.(((((((((((((.((.........)).))))))))))))).)))))))))))))))))))))).)))))......(((........))).

Structure
-uuagugaaaaccuauaacua     c                      U             a  cua 
                     cuacu ccucugauccaaaaUAAGUGUC CAGUUUUGAACUa gc   g
                     ||||| |||||||||||||||||||||| ||||||||||||| ||   u
                     gauga ggagacuagguuuuauucacag gucaaaacuugau ug   u
ucguucguguauacgucaaua     u                      c             c  aac 


Annotation confidence Not enough data
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Genome context
3: 56704432-56704571 [+]

Database links

Mature bdi-miR5180a

Accession MIMAT0020729
Description Brachypodium distachyon bdi-miR5180a mature miRNA
Sequence 41 - UAAGUGUCUCAGUUUUGAACU - 61
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293