Stem-loop sequence bdi-MIR164c

Accession

MI0018152 (change log)

Description

Brachypodium distachyon miR164c stem-loop

Gene family

MIPF0000045; MIR164

Literature search

3 open access papers mention bdi-MIR164c
(17 sentences)

Stem-loop

   ----a   uuuga  -a  g        c  a  u           c  g         -     ggu    c 
5'      uga     gg  ga ggggcgag aa cc ugcuggagaag ag gcacgugcu ugacc   cggc g
        |||     ||  || |||||||| || || ||||||||||| || ||||||||| |||||   ||||  
3'      gcu     cc  cu ccccgcuc uu gg acgaccucuuc uc cguguacga guugg   gccg g
   ggacg   ugcgg  ag  g        -  c  u           c  g         c     ---    a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 59107074-59107211 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018152

Mature sequence bdi-miR164c-5p

• Accession: MIMAT0020728
• Sequence: 34 - uggagaagcagggcacgugcu - 54
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR164c-3p

• Accession: MIMAT0027084
• Sequence: 83 - caugugcgcuccuucuccagc - 103
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).