Stem-loop sequence bdi-MIR5175b

Accession

MI0018146 (change log)

Description

Brachypodium distachyon miR5175b stem-loop

Gene family

MIPF0001200; MIR5067

Literature search

2 open access papers mention bdi-MIR5175b
(2 sentences)

Stem-loop

   ucc     ---  u  uu     a    gaac                           auu        u  a 
5'    aaguu   gg gu  gcgug uuca    uacuuccucuguuccuaaauucuuguc   guuuuagu ca a
      |||||   || ||  ||||| ||||    |||||||||||||||||||||||||||   |||||||| ||  
3'    uucga   cc ca  cguau gagu    augagggagguaaggauuuaagaacag   cgaaauua gu u
   -uu     uuc  u  -u     a    ----                           cac        u  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 19465406-19465546 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018146

Mature sequence bdi-miR5175b

• Accession: MIMAT0020722
• Sequence: 35 - ccucuguuccuaaauucuugu - 55
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).