miRBase entry: bdi-MIR5175a

Stem-loop bdi-MIR5175a


Accession
MI0018144
Description
Brachypodium distachyon bdi-MIR5175a precursor miRNA
Gene family
MIPF0001200; MIR5067

Literature search
2 open access papers mention bdi-MIR5175a
(2 sentences)

Sequence

gacuguggccacccauuaccauaaguacuucuucuguuccuaaauucuuaccgcuguuuuaguucaaauuuguacuaaaacaacgauAAGAAUUUAGGAACGGAGGGAauacuuucauaauuuaucuugcucuccau
...(((((..........)))))((((.((((((((((((((((((((((.((.(((((((((.((....)).))))))))).)).)))))))))))))))))))))).))))........................

Structure
-gacuguggccacccauuaccaua    c                      c  c         u  a 
                        agua uucuucuguuccuaaauucuua cg uguuuuagu ca a
                        |||| |||||||||||||||||||||| || ||||||||| ||  
                        ucau AGGGAGGCAAGGAUUUAAGAAu gc acaaaauca gu u
uaccucucguucuauuuaauacuu    a                      a  a         u  u 


Annotation confidence Not enough data
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Genome context
1: 15325058-15325194 [+]

Database links

Mature bdi-miR5175a

Accession MIMAT0020719
Description Brachypodium distachyon bdi-miR5175a mature miRNA
Sequence 88 - AAGAAUUUAGGAACGGAGGGA - 108
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293