Stem-loop sequence bdi-MIR5175a

Accession

MI0018144 (change log)

Description

Brachypodium distachyon miR5175a stem-loop

Gene family

MIPF0001200; MIR5067

Literature search

2 open access papers mention bdi-MIR5175a
(2 sentences)

Stem-loop

   ---  cu ug ccaccc    ccau     c                      c  c         u  a 
5'    ga  g  g      auua    aagua uucuucuguuccuaaauucuua cg uguuuuagu ca a
      ||  |  |      ||||    ||||| |||||||||||||||||||||| || ||||||||| ||  
3'    cu  c  u      uaau    uucau agggaggcaaggauuuaagaau gc acaaaauca gu u
   uac  cu gu -cuauu    -acu     a                      a  a         u  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 15325058-15325194 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018144

Mature sequence bdi-miR5175a

• Accession: MIMAT0020719
• Sequence: 88 - aagaauuuaggaacggaggga - 108
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).