Stem-loop sequence bdi-MIR5171a

Accession

MI0018140 (change log)

Previous IDs

bdi-MIR5171

Description

Brachypodium distachyon miR5171 stem-loop

Gene family

MIPF0000382; MIR1122

Literature search

1 open access papers mention bdi-MIR5171a
(1 sentences)

Stem-loop

   ------auucaaacauuugcc     u         cua u          c   - cg      uacauagaucuaua 
5'                      aaaau gcaugcuuc   c ucucauauua gug c  aaauuu              u
                        ||||| |||||||||   | |||||||||| ||| |  ||||||              a
3'                      uuuua uguaugaag   g aggguauaau cac g  uuuaaa              c
   gugcagucgauugcgcugcca     u         aag c          u   u aa      caaguuuauacuua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 46051254-46051407 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018140

Mature sequence bdi-miR5171a

• Accession: MIMAT0020715
• Previous IDs: bdi-miR5171
• Sequence: 101 - acuuaauaugggacggaagaa - 121
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).