Stem-loop sequence bdi-MIR5180b

Accession

MI0018138 (change log)

Description

Brachypodium distachyon miR5180b stem-loop

Gene family

MIPF0001200; MIR5067

Literature search

2 open access papers mention bdi-MIR5180b
(2 sentences)

Stem-loop

   --g   u    aau  -------u                           u          c  a  cua 
5'    gca acuu   ag        uacugccuccgauccaaaauaaguguc caguuuugaa ua gc   g
      ||| ||||   ||        ||||||||||||||||||||||||||| |||||||||| || ||   u
3'    ugu ugaa   uc        augauggaggcuagguuuuauucacag gucaaaacuu au cg   u
   uca   u    -gu  uugaaauu                           c          u  c  aac 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Bd21; GCA_000005505.1): 4: 5647864-5647998 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018138

Mature sequence bdi-miR5180b

• Accession: MIMAT0020713
• Sequence: 35 - uaagugucucaguuuugaacu - 55
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).