miRBase entry: bdi-MIR5169a

Stem-loop bdi-MIR5169a


Accession
MI0018136
Description
Brachypodium distachyon bdi-MIR5169a precursor miRNA
Gene family
MIPF0001872; MIR5169


Sequence

uccuuuuuauaagauguucuagcuuugucucuugaagUUUGACCAAGUUUGUAGAACAguauacuaauaucuaacaguaucaaauaaguauacuaugaagauauaugcaauugaggauuuaauaaaacuaauuuagaguuguagauguugguauauuuuucuauaaacuuggucaaauuuaaaaaguuugaauuggaacaaagcuagaac
...............(((((((((((((.(((..((((((((((((((((((((((.(((((((((((((((...((((((......).)))))............((((((..(((((..........)))))..))))))))))))))))))))).))))))))))))))))))))))..............))))))))))))))))

Structure
uccuuuuuauaagau             c   ------------ug                      C               aacaguaucaaauaaguauacuaugaagauauau      ga     uaau 
               guucuagcuuugu ucu              aagUUUGACCAAGUUUGUAGAA Aguauacuaauaucu                                  gcaauu  ggauu    a
               ||||||||||||| |||              |||||||||||||||||||||| |||||||||||||||                                  ||||||  |||||     
               caagaucgaaaca agg              uuuaaacugguucaaauaucuu uuauaugguuguaga                                  uguuga  uuuaa    a
---------------             -   uuaaguuugaaaaa                      u               ----------------------------------      ga     ucaa 


Annotation confidence Not enough data
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Genome context
4: 42248170-42248379 [-]

Database links

Mature bdi-miR5169a

Accession MIMAT0020711
Description Brachypodium distachyon bdi-miR5169a mature miRNA
Sequence 38 - UUUGACCAAGUUUGUAGAACA - 58
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293