Stem-loop bdi-MIR5166

Accession

MI0018133

Description

Brachypodium distachyon bdi-MIR5166 precursor miRNA

Sequence

uuuccugaucgagaaccgagcuuagcuugggugguuagcccagcgagguauguuggcUGCCCACCAGGGUUCGAUCCAacaaggucgcauucuauauaaauaauuuucguaaggugaggcaccaaaaugcaauccaaucacgccucuccuacaaauauauaucuauaauuuuguaaggugaggcaccagaaugcgacccaaucacgccucuacuacaauauguauauaauuuucguaaggugaggcgccagaaugugaccuugugggaucggacccuggugugcagccagcauaccucgcugggcuaaccuaacacccaagcugagcucaguucucuucu
..........((((((.(((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((.(((((((((((((((...................((((...)))).....(((.((.......(((((.((((((((..(((....)))..))))).))).)))))....)).)))..........((((((.(((....((((...........)))).)))))))))..))))))))))))))).)))))))))))))))).))))))))))))))))))))))))))))....))))))))))))))).))))))....

Structure

uuuccugauc      c               ----                            C                A               --------------------auauaaauaauuuucguaaggugaggcaccaaaau   a  caaucac     u   -     ua   a 
          gagaac gagcuuagcuugggu    gguuagcccagcgagguauguuggcUGC CACCAGGGUUCGAUCC acaaggucgcauucu                                                       gca uc       gccuc ccu acaaa  uau u
          |||||| |||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||                                                       ||| ||       ||||| ||| |||||  |||  
          cucuug cucgagucgaaccca    ccaaucgggucgcuccauacgaccgacg guggucccaggcuagg uguuccaguguaaga                                                       cgu ag       cggag gga uguuu  aua c
------ucuu      a               caau                            u                g               ccgcggaguggaaugcuuuuaauauauguauaacaucaucuccgcacuaacccag   a  ---acca     u   a     ua   u 

Annotation confidence Not enough data

Genome context

4: 14440355-14440694 [+]

Mature bdi-miR5166

• Accession: MIMAT0020708
• Description: Brachypodium distachyon bdi-miR5166 mature miRNA
• Sequence: 58 - UGCCCACCAGGGUUCGAUCCA - 78
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293