miRBase entry: bdi-MIR5165

Stem-loop bdi-MIR5165


Accession
MI0018132
Description
Brachypodium distachyon bdi-MIR5165 precursor miRNA


Sequence

uagcuuuggggcagaguuaccaugaauucccugccauAUCUUGGGCUCUAGGUAGGUUcaauccucaauugaaugaaucgaaggaauuaaacccagcagcaaacaaacugaaauuaccaaauugguaauuucuguuuuuugcugcucgauuuaauuccuucguuucaauugaggauauaaCCUACCUUGAGCCAAAGAUAUggugggaauucaugguaaccagagcuacaaaaguugggacuauuuacu
(((((((((.......(((((((((((((((.((((((((((.(((((.(((((((((..(((((((((((((.....(((((((((((((.(.(((((((((.((((.((((((((((...)))))))))).))))))))))))).).))))))))))))).)))))))))))))..))))))))).))))).)))))))))))))))))))))))))))))))))).....................

Structure
---------------------         ggcagag               u          G     U         ca             ugaau             c c         c    u          a 
                     uagcuuugg       uuaccaugaauuccc gccauAUCUU GGCUC AGGUAGGUU  auccucaauugaa     cgaaggaauuaaa c agcagcaaa aaac gaaauuacca  
                     |||||||||       ||||||||||||||| |||||||||| ||||| |||||||||  |||||||||||||     ||||||||||||| | ||||||||| |||| |||||||||| a
                     aucgagacc       aaugguacuuaaggg uggUAUAGAA CCGAG UCCAUCCaa  uaggaguuaacuu     gcuuccuuaauuu g ucgucguuu uuug cuuuaauggu  
ucauuuaucaggguugaaaac         -------               -          A     U         ua             ----u             a c         -    u          u 


Annotation confidence Not enough data
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Genome context
4: 33186148-33186396 [-]

Database links

Mature bdi-miR5165-5p

Accession MIMAT0020707
Description Brachypodium distachyon bdi-miR5165-5p mature miRNA
Sequence 38 - AUCUUGGGCUCUAGGUAGGUU - 58
Evidence experimental
Illumina [1,3]

Mature bdi-miR5165-3p

Accession MIMAT0027077
Description Brachypodium distachyon bdi-miR5165-3p mature miRNA
Sequence 181 - CCUACCUUGAGCCAAAGAUAU - 201
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  3. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443