Stem-loop bdi-MIR5163a

Accession

MI0018129

Description

Brachypodium distachyon bdi-MIR5163a precursor miRNA

Gene family

MIPF0001817; MIR5163

Sequence

cagaggcucgucgauugcaaaucaugcgugcaucuuucuauuauugagcguaCCUAGCCUAAAAUAUUUAAAAauaauuggagcaacuaaaguuguuguuguucaauuacuuUUAGGUAUUUCAGGUUAGGUGgcuaaccaaugguggaaguugcacaccugauuugcgauuaucaacuuuaggau
.((((....(..((((((((((((.(.(((((..(((((((((((((((.((((((((((.((((((((((((.(((((((((((((.......)))))..)))))))).)))))))))))).)))))))))))))...)))))))))))).))))).).))))))))))))..)..)))).....

Structure

----c    gcuc uc            u c     uc            ---   g          A            a        --     ua 
     agag    g  gauugcaaauca g gugca  uuucuauuauug   agc uaCCUAGCCU AAAUAUUUAAAA uaauugga  gcaac  a
     ||||    |  |||||||||||| | |||||  ||||||||||||   ||| |||||||||| |||||||||||| ||||||||  |||||  a
     uuuc    c  uuagcguuuagu c cacgu  gaaggugguaac   ucg GUGGAUUGGA UUUAUGGAUUuu auuaacuu  uguug  g
uagga    --aa ua            c a     -u            caa   -          C            c        gu     uu 

Annotation confidence Not enough data

Genome context

4: 11947824-11948009 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR5163a

Mature bdi-miR5163a-3p

• Accession: MIMAT0020704
• Description: Brachypodium distachyon bdi-miR5163a-3p mature miRNA
• Sequence: 113 - UUAGGUAUUUCAGGUUAGGUG - 133
• Evidence: experimental ; Illumina [2]

Mature bdi-miR5163a-5p

• Accession: MIMAT0027076
• Description: Brachypodium distachyon bdi-miR5163a-5p mature miRNA
• Sequence: 53 - CCUAGCCUAAAAUAUUUAAAA - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443