miRBase entry: bdi-MIR169c

Stem-loop bdi-MIR169c


Accession
MI0018126
Description
Brachypodium distachyon bdi-MIR169c precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
3 open access papers mention bdi-MIR169c
(28 sentences)

Sequence

uugccauacgcuaagaggcagagaaggggaugCAGCCAAGGAUGACUUGCCGGcuccugguguugggggaauugcagcuuuguugagccuugaguuagccGGCAGGUUGUCCUUGGCUACaccuaguucucuucuucugguguuuggcccu
..((((.((((((.((((.((((((.(((.((.(((((((((((((((((((((((((........))))......((((....)))).........))))))))))))))))))))).)))))..)))))).)))))))))).))))...

Structure
-uu    u      a    c      -g   a  C                     ---------------------------    ggu 
   gcca acgcua gagg agagaa  ggg ug AGCCAAGGAUGACUUGCCGGc                           uccu   g
   |||| |||||| |||| ||||||  ||| || |||||||||||||||||||||                           ||||    
   cggu uguggu cuuc ucucuu  ucc aC UCGGUUCCUGUUGGACGGccg                           aggg   u
ucc    u      -    u      ga   -  A                     auugaguuccgaguuguuucgacguua    ggu 


Annotation confidence Not enough data
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Genome context
5: 23763870-23764020 [-]

Database links

Mature bdi-miR169c-5p

Accession MIMAT0020701
Description Brachypodium distachyon bdi-miR169c-5p mature miRNA
Sequence 33 - CAGCCAAGGAUGACUUGCCGG - 53
Evidence experimental
Illumina [2]

Mature bdi-miR169c-3p

Accession MIMAT0027073
Description Brachypodium distachyon bdi-miR169c-3p mature miRNA
Sequence 101 - GGCAGGUUGUCCUUGGCUAC - 120
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443