Stem-loop sequence bdi-MIR169c

Accession

MI0018126 (change log)

Description

Brachypodium distachyon miR169c stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

3 open access papers mention bdi-MIR169c
(28 sentences)

Stem-loop

   -uu    u      a    c      -g   a  c         ug           ccugguguugggggaauug 
5'    gcca acgcua gagg agagaa  ggg ug agccaagga  acuugccggcu                   c
      |||| |||||| |||| ||||||  ||| || |||||||||  |||||||||||                   a
3'    cggu uguggu cuuc ucucuu  ucc ac ucgguuccu  uggacggccga                   g
   ucc    u      -    u      ga   -  a         gu           uugaguuccgaguuguuuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 23763870-23764020 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018126

Mature sequence bdi-miR169c-5p

• Accession: MIMAT0020701
• Sequence: 33 - cagccaaggaugacuugccgg - 53
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR169c-3p

• Accession: MIMAT0027073
• Sequence: 101 - ggcagguuguccuuggcuac - 120
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).