Stem-loop sequence bdi-MIR169h

Accession

MI0018124 (change log)

Description

Brachypodium distachyon miR169h stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

3 open access papers mention bdi-MIR169h
(27 sentences)

Stem-loop

   ----   g      -   c      ugcuuc   c   -        a     u      --a uu    cu  a    u      uaa 
5'     cuu caugag ggc agagcc      cuc ggu agccaagg ugacu gccuau   u  gcuc  uc gaag ccuggu   u
       ||| |||||| ||| ||||||      ||| ||| |||||||| ||||| ||||||   |  ||||  || |||| ||||||   u
3'     gaa guauuc ccg ucucgg      gag ccg ucgguucc acuga cggaua   g  ugag  ag cuuu ggaccg   a
   uccg   g      u   u      -----u   u   a        -     -      gcg uu    -u  a    -      uac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 11563834-11563997 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018124

Mature sequence bdi-miR169h-5p

• Accession: MIMAT0020699
• Sequence: 33 - uagccaaggaugacuugccua - 53
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR169h-3p

• Accession: MIMAT0027071
• Sequence: 115 - ggcagucaccuuggcuagc - 133
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).