miRBase entry: bdi-MIR156d

Stem-loop bdi-MIR156d


Accession
MI0018122
Description
Brachypodium distachyon bdi-MIR156d precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
5 open access papers mention bdi-MIR156d
(26 sentences)

Sequence

gccggccggcagggucaugugugcgcgcggUGACAGAAGAGAGUGAGCACacggccgggcgggacggcacccggcggauuggugccgucgcggccgcguGCUCACUGCUCUGUCUGUCACCuuugcccagaaggccgccucuucacggaca
..(((((..(.((((...(((....)))((((((((((((((((((((((.(((((....(.(((((((((.........))))))))).)))))).))))))))).)))).)))))))))...)))).)..)))))..............

Structure
------------gc     gg a    caugugugcgcgc         -    -         a     gggc g         cgg 
              cggcc  c gggu             ggUGACAGA AGAG AGUGAGCAC cggcc    g gacggcacc   c
              |||||  | ||||             ||||||||| |||| ||||||||| |||||    | |||||||||   g
              gccgg  g cccg             CCACUGUCU UCUC UCACUCGug gccgg    c cugccgugg   g
acaggcacuucucc     aa a    ----------uuu         G    G         c     ---- g         uua 


Annotation confidence Not enough data
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Genome context
5: 18202182-18202332 [-]

Database links

Mature bdi-miR156d-5p

Accession MIMAT0020697
Description Brachypodium distachyon bdi-miR156d-5p mature miRNA
Sequence 31 - UGACAGAAGAGAGUGAGCAC - 50
Evidence experimental
Illumina [2]

Mature bdi-miR156d-3p

Accession MIMAT0027069
Description Brachypodium distachyon bdi-miR156d-3p mature miRNA
Sequence 100 - GCUCACUGCUCUGUCUGUCACC - 121
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443