Stem-loop sequence bdi-MIR156d

Accession

MI0018122 (change log)

Description

Brachypodium distachyon miR156d stem-loop

Gene family

MIPF0000008; MIR156

Literature search

5 open access papers mention bdi-MIR156d
(26 sentences)

Stem-loop

   --gccggccggcagggucaugugugcgcgc         -    -         a      ggcgg         cgg 
5'                               ggugacaga agag agugagcac cggccg     gacggcacc   c
                                 ||||||||| |||| ||||||||| ||||||     |||||||||   g
3'                               ccacugucu ucuc ucacucgug gccggc     cugccgugg   g
   acaggcacuucuccgccggaagacccguuu         g    g         c      ----g         uua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 18202182-18202332 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018122

Mature sequence bdi-miR156d-5p

• Accession: MIMAT0020697
• Sequence: 31 - ugacagaagagagugagcac - 50
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR156d-3p

• Accession: MIMAT0027069
• Sequence: 100 - gcucacugcucugucugucacc - 121
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).