Stem-loop sequence bdi-MIR172b

Accession

MI0018121 (change log)

Description

Brachypodium distachyon miR172b stem-loop

Gene family

MIPF0000035; MIR172

Literature search

6 open access papers mention bdi-MIR172b
(18 sentences)

Stem-loop

   guuc  --g  ---gacc     g    u    c  ug               a    a   cau   --    uc     u  ca        ---     u        -    u     cuaauuaaguaauu 
5'     gc   gc       agucg ugau ucug ug  gcaucaucaagauuc caca aug   gcu  agcu  gucua gc  uccuuucu   caucu ucgaucuc gauc cggcc              a
       ||   ||       ||||| |||| |||| ||  ||||||||||||||| |||| |||   |||  ||||  ||||| ||  ||||||||   ||||| |||||||| |||| |||||              u
3'     cg   ug       ucagu acua aggc ac  cguaguaguucuaag gugu uau   cga  ucga  uagau cg  aggagagg   guagg agcuagag uuag gccgg              a
   ---a  gua  aacaaaa     g    c    u  gu               g    g   --u   ua    -u     -  --        ugc     u        g    -     cuagguguuaaccc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 2: 58915755-58916008 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018121

Mature sequence bdi-miR172b

• Accession: MIMAT0020696
• Sequence: 204 - ggaaucuugaugaugcugcau - 224
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).