miRBase entry: bdi-MIR396a

Stem-loop bdi-MIR396a


Accession
MI0018111
Description
Brachypodium distachyon bdi-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
2 open access papers mention bdi-MIR396a
(5 sentences)

Sequence

gcgcggcucaauuacagguugcggccaugcucUCCACAGGCUUUCUUGAACUGugaacucgugcgccuagccugcuagcugcucaauucgaucugucauccucgguucgauucgaucugaauugcuuguauaugauaugaugugccuuguugaugGUUCAAGAAAGUCCUUGGAAAacauggccgccgccucuuuccccugcuggcuua
((.((((........((((.(((((((((...((((..((((((((((((((((.(((....(((.((((....)))).))).((((((((((.(((..(....)...)))..)))).))))))...((((((......))))))...))).))))))))))))))))..))))...))))))))).)))).........))))))...

Structure
---  g    -ucaauuac    u         cuc    CA                g   ucgugcgccuagccugcuagcugcu      -    -u   -au c 
   gc cggc         aggu gcggccaug   UCCA  GGCUUUCUUGAACUGu aac                         caauuc gauc  guc   c u
   || ||||         |||| |||||||||   ||||  |||||||||||||||| |||                         |||||| ||||  |||   |  
   cg gucg         uccg cgccgguac   AGGU  CUGAAAGAACUUGgua uug                         guuaag cuag  uag   g c
auu  -    uccccuuuc    c         aAA    UC                g   -uuccguguaguauaguauauguuc      u    cu   cuu g 


Annotation confidence Not enough data
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Genome context
3: 59349783-59349991 [-]

Database links

Mature bdi-miR396a-5p

Accession MIMAT0020686
Description Brachypodium distachyon bdi-miR396a-5p mature miRNA
Sequence 33 - UCCACAGGCUUUCUUGAACUG - 53
Evidence experimental
Illumina [1,3]

Mature bdi-miR396a-3p

Accession MIMAT0027062
Description Brachypodium distachyon bdi-miR396a-3p mature miRNA
Sequence 156 - GUUCAAGAAAGUCCUUGGAAA - 176
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  3. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443