Stem-loop sequence bdi-MIR399b

Accession

MI0018103 (change log)

Description

Brachypodium distachyon miR399b stem-loop

Gene family

MIPF0000015; MIR399

Literature search

3 open access papers mention bdi-MIR399b
(8 sentences)

Stem-loop

   --c    -u   g  au      -ga    ua   u           c     c  a  u  --ag       -g  g  aauc 
5'    gugu  auu ag  gagggu   gaau  cag gcgguucuccu uggca gg gg cg    gguagcc  gc gc    c
      ||||  ||| ||  ||||||   ||||  ||| ||||||||||| ||||| || || ||    |||||||  || ||     
3'    caua  ugg uc  cuccca   cuua  guc cguuaagagga accgu cc cc gc    ccgucgg  cg cg    g
   aua    uu   g  --      aua    cc   c           a     u  -  u  cuga       ag  g  accg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 7135266-7135425 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR399b

• bdi-MIR399d: 3: 7132920-7133061 [-]
• bdi-MIR399b: 3: 7135266-7135425 [+]

Database links

• miRBase Tracker:MI0018103

Mature sequence bdi-miR399b

• Accession: MIMAT0020678
• Sequence: 110 - ugccaaaggagaauugcccug - 130
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).