miRBase entry: bdi-MIR399b

Stem-loop bdi-MIR399b


Accession
MI0018103
Description
Brachypodium distachyon bdi-MIR399b precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
3 open access papers mention bdi-MIR399b
(8 sentences)

Sequence

cguguuauugagaugagggugagaauuacagugcgguucuccucuggcacggaggucgaggguagccggcggcaauccggccagcggcgaggcugccaguccguccccuUGCCAAAGGAGAAUUGCCCUGccauucauaacccuccuggguuuauacaua
.((((.(((.((..((((((..((((..(((.(((((((((((.(((((.((.((.((..(((((((.((.((..........)).))..)))))))....)).)))).))))).))))))))))).)))..))))...)))))))).)))..))))...

Structure
--c    -u   g  au      -ga    ua   u           c     c  a  u  --ag       -g  g  aauc 
   gugu  auu ag  gagggu   gaau  cag gcgguucuccu uggca gg gg cg    gguagcc  gc gc    c
   ||||  ||| ||  ||||||   ||||  ||| ||||||||||| ||||| || || ||    |||||||  || ||     
   caua  ugg uc  cuccca   cuua  GUC CGUUAAGAGGA ACCGU cc cc gc    ccgucgg  cg cg    g
aua    uu   g  --      aua    cc   C           A     u  -  u  cuga       ag  g  accg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
3: 7135266-7135425 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR399b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR399b

Accession MIMAT0020678
Description Brachypodium distachyon bdi-miR399b mature miRNA
Sequence 110 - UGCCAAAGGAGAAUUGCCCUG - 130
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293