miRBase entry: bdi-MIR167c

Stem-loop bdi-MIR167c


Accession
MI0018095
Description
Brachypodium distachyon bdi-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
2 open access papers mention bdi-MIR167c
(7 sentences)

Sequence

uucacuugcuguggugcaucuucuaggagcUGAAGCUGCCAGCAUGAUCUGAcgagaguuccucgucugauagcaauguuuaauucucuugucaugacuaaugaucaGAUCAUGCUGUGCAGUUUCAUCugcuuguggaugcacaagauacuguucaua
..(((.....)))((((((((.(.((.((.(((((((((((((((((((((..(((((((...(((.((....)))))...)))))))..(((((.....))))))))))))))))).))))))))).)).)).).))))))))...............

Structure
--uucacuugcugug        u u  g  c         -            ---------------Ac       ccu   c  a 
               gugcaucu c ag ag UGAAGCUGC CAGCAUGAUCUG                 gagaguu   cgu ug u
               |||||||| | || || ||||||||| ||||||||||||                 |||||||   ||| ||  
               cacguagg g uc uC ACUUUGACG GUCGUACUAGac                 cucuuaa   gua ac a
auacuugucauagaa        u u  g  U         U            uaguaaucaguacuguu       uuu   -  g 


Annotation confidence Not enough data
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Genome context
1: 54067075-54067233 [+]

Database links

Mature bdi-miR167c-5p

Accession MIMAT0020670
Description Brachypodium distachyon bdi-miR167c-5p mature miRNA
Sequence 31 - UGAAGCUGCCAGCAUGAUCUGA - 52
Evidence experimental
Illumina [2]

Mature bdi-miR167c-3p

Accession MIMAT0027050
Description Brachypodium distachyon bdi-miR167c-3p mature miRNA
Sequence 108 - GAUCAUGCUGUGCAGUUUCAUC - 129
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443