Stem-loop bdi-MIR164b

Accession

MI0018094

Description

Brachypodium distachyon bdi-MIR164b precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

3 open access papers mention bdi-MIR164b
(17 sentences)

Sequence

aagagaggagagcucagcgagaaggaccgcguUGGAGAAGCAGGGCACGUGCAugcaugcaacuagagcuuagcuagugucaauucuuccaucucuugugccuggccgggaucgaucuuauauaccgagcuuaauuuggcaccuauuggaugcugcaugcauguguucuucuccuccaucacggucuucauuucucucgcuuucuuuac
....(((((((((..((.(((((((((((.(.(((((.((.((((((((((((((((.((((((((.......))))).........((((......(((((.((((((...............))).)))......)))))....))))))))))))))))))))))).)).))))).).)))))))..)))).)).)))))))))..

Structure

aaga         uc  c    --       c u     A  C                u   acuagagcuuagcuagugucaauucu    ucucuu     -----u   -   gaucga 
    gaggagagc  ag gaga  aggaccg g UGGAG AG AGGGCACGUGCAugca gca                          ucca      gugcc      ggc cgg      u
    |||||||||  || ||||  ||||||| | ||||| || |||||||||||||||| |||                          ||||      |||||      ||| |||      c
    uuucuuucg  uc cuuu  uucuggc c accuc uc ucuuguguacguacgu cgu                          aggu      cacgg      ucg gcc      u
--ca         -c  u    ac       a u     c  u                -   --------------------------    --uauc     uuuaau   a   auauau 

Annotation confidence Not enough data

Genome context

1: 14544140-14544348 [+]

Mature bdi-miR164b

• Accession: MIMAT0020669
• Description: Brachypodium distachyon bdi-miR164b mature miRNA
• Sequence: 33 - UGGAGAAGCAGGGCACGUGCA - 53
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293