Stem-loop bdi-MIR171d

Accession

MI0018090

Description

Brachypodium distachyon bdi-MIR171d precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

1 open access papers mention bdi-MIR171d
(2 sentences)

Sequence

gcugaggcaagggaaugaugaaauggccacuaugaUGUUGGCUCGACUCACUCAGAcgacaccggccggagcgaugcgugcgugcuagcucgacggcguguuucUGAUUGAGCCGUGCCAAUAUCuuagugcucuuucaugcauagaagcuaucuu
.....(((......(((((((((.(((.((((.(((((((((.((.((((.(((((.(((((..((((((((...((......))..))))..)))))))))))))).)))).)).))))))))).))))))).)))))).)))....))).....

Structure

gcuga   aaggga   -      u   c    u         U  A    C     c     cg    --    gau  gu 
     ggc      aug augaaa ggc acua gaUGUUGGC CG CUCA UCAGA gacac  gccg  gagc   gc  g
     |||      ||| |||||| ||| |||| ||||||||| || |||| ||||| |||||  ||||  ||||   ||   
     ucg      uac uacuuu ucg ugau CUAUAACCG GC GAGU AGUcu uugug  cggc  cucg   cg  c
uucua   --aaga   g      c   -    u         U  C    U     -     --    ag    -au  ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature bdi-miR171d-3p

• Accession: MIMAT0020665
• Description: Brachypodium distachyon bdi-miR171d-3p mature miRNA
• Sequence: 105 - UGAUUGAGCCGUGCCAAUAUC - 125
• Evidence: experimental ; Illumina [2]

Mature bdi-miR171d-5p

• Accession: MIMAT0027047
• Description: Brachypodium distachyon bdi-miR171d-5p mature miRNA
• Sequence: 36 - UGUUGGCUCGACUCACUCAGA - 56
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443