Stem-loop sequence bdi-MIR160a

AccessionMI0018086 (change log)
DescriptionBrachypodium distachyon miR160a stem-loop
Gene family MIPF0000032; MIR160
Literature search

2 open access papers mention bdi-MIR160a
(6 sentences)

Stem-loop 
   ugc   ag    u  aaaaaaaaau     ----    c       c         cu    -   cu      aacuca     a   c 
5'    gga  gagg ga          gggau    augc uggcucc uguaugcca  cgcg uag  gccaac      guuug gcu c
      |||  |||| ||          |||||    |||| ||||||| |||||||||  |||| |||  ||||||      ||||| ||| c
3'    ccu  cucc cu          cucug    uacg accgagg gcgugcggu  gcgc auc  cgguug      caaac cgg c
   -uc   cu    -  cccucccccu     ccag    a       a         ag    c   -u      caaacg     c   c
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Bd21; GCA_000005505.1) Overlapping transcripts
1: 4550703-4550877 [-]
intergenic
Database links

Mature sequence bdi-miR160a-5p

Accession MIMAT0020661
Sequence

32 -  

ugccuggcucccuguaugcca

 - 52

Get sequence
Evidence experimental; Illumina [2]

Mature sequence bdi-miR160a-3p

Accession MIMAT0027044
Sequence

124 -  

gcgugcgaggagccaagcaug

 - 144

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2
PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).