Stem-loop sequence bdi-MIR169d

Accession

MI0018079 (change log)

Description

Brachypodium distachyon miR169d stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

3 open access papers mention bdi-MIR169d
(27 sentences)

Stem-loop

   ---------    -a    g      u ccuugau      -         u    ug       uu   cu u        -         gcaugguaacca 
5'          augg  gaug agagcc c       uuuggu agccaagaa gacu  ccuaugc  gcc  c gcuaacca gcuagccau            a
            ||||  |||| |||||| |       |||||| ||||||||| ||||  |||||||  |||  | |||||||| |||||||||            u
3'          uacc  cuac ucucgg g       agaccg ucgguucuu cugg  ggguacg  ugg  g ugauuggu cgguuggug            g
   accggaccg    ac    -      c -------      a         -    gu       -u   -u -        g         uucuuuaaacag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 4: 26242409-26242595 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018079

Mature sequence bdi-miR169d

• Accession: MIMAT0020654
• Sequence: 31 - uagccaagaaugacuugccua - 51
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).