miRBase entry: osa-MIR5158

Stem-loop osa-MIR5158


Accession
MI0018074
Description
Oryza sativa osa-MIR5158 precursor miRNA

Literature search
2 open access papers mention osa-MIR5158
(4 sentences)

Sequence

14 reads, 12 reads per million, 2 experiments
ucagaguaauucguccucaucccaaugcucgucaucuacgguuggaaaaagccaugaacuuuauguggcauaacggcucaccucuauggguacacaguguggaagcggacaaagucucuagcucacaaagaugaguggagaugacuuuguccgcuuccgcucggucugccugcauuggagaaccguugugccguguaaagggcaugaauucuuccaguuguugaugauggUGAGCCACUGGGAUGAGGAUGAAUacuccgacaaca
((.(((((.(((((((((((((((..((((((((((.((((((((((.((..((((..((((((((((((((((((.((.((.....(((((.((.(.(((((((((((((((((((((.(((((......)))))..))).)))))))))))))))))).).)).))))).....)).)).))))))))))))))))))..))))..)).)))))))))).))))))...))))...)))))))))))))))))))).)).....

Structure
-----  a     a               -au    ---      u          a  gc    aa                  c  a  ucuau     c  a u                  -   -a     ca 
     uc gagua uucguccucauccca   gcuc   gucauc acgguuggaa aa  caug  cuuuauguggcauaacgg uc cc     gggua ac g guggaagcggacaaaguc ucu  gcuca  a
     || ||||| |||||||||||||||   ||||   |||||| |||||||||| ||  ||||  |||||||||||||||||| || ||     ||||| || | |||||||||||||||||| |||  |||||   
     ag cucaU AAGUAGGAGUAGGGU   CGAG   uaguag uguugaccuu uu  guac  gaaaugugccguguugcc ag gg     uccgu ug c cgccuucgccuguuucag aga  ugagu  a
acaac  c     -               CAC    Ugg      u          c  aa    gg                  a  a  uuacg     c  g u                  u   gg     ag 


Annotation confidence Not enough data
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Genome context
Chr8: 23993370-23993635 [+]

Database links

Mature osa-miR5158

Accession MIMAT0021111
Description Oryza sativa osa-miR5158 mature miRNA
Sequence 231 - UGAGCCACUGGGAUGAGGAUGAAU - 254
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21525786
    Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
    "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
    "RNA Biol (2011) 8:538-547