miRBase entry: osa-MIR5152

Stem-loop osa-MIR5152


Accession
MI0018067
Description
Oryza sativa osa-MIR5152 precursor miRNA


Sequence

uaaagGUAGGGAUAGGCAUGAUCUCUuucucaccaaauuucuaagaccaaacucaacuucguuuggaaaguuaaaauaagacaaauuuugcaugaaacuucccuaucacuauccgugcaaaguuuguauuucuuguaucuugcaagcaaauuugaauuuggucuugaaauuuuguggagauauAGACCAUGCCUAUACCUACCAcuaauauuuaug
....((((((..((((((((.(((...((((((.(((((((.(((((((((.((((.((.(((((.((.((..((..((.((((((((((((((...................)))))))))))))).))..))..)).)).))))).)).)))).)))))))))))))))).)).))))...))).))))))))..)))))).............

Structure
---------uaaa      GA        A   CUu    -  c       u         c    c  c     g  a  ua  au  g              aaacuucc 
             gGUAGG  UAGGCAUG UCU   ucuc ac aaauuuc aagaccaaa ucaa uu guuug aa gu  aa  aa acaaauuuugcaug        c
             ||||||  |||||||| |||   |||| || ||||||| ||||||||| |||| || ||||| || ||  ||  || ||||||||||||||        u
             CCAUCC  AUCCGUAC AGA   agag ug uuuaaag uucugguuu aguu aa cgaac uu ua  uu  uu uguuugaaacgugc        a
guauuuauaaucA      AU        C   uau    g  u       -         a    u  a     g  c  ug  cu  a              cuaucacu 


Annotation confidence Not enough data
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Genome context
Chr5: 28910038-28910253 [-]

Database links

Mature osa-miR5152-5p

Accession MIMAT0021101
Description Oryza sativa osa-miR5152-5p mature miRNA
Sequence 6 - GUAGGGAUAGGCAUGAUCUCU - 26
Evidence experimental
Illumina [1-2]

Mature osa-miR5152-3p

Accession MIMAT0021102
Description Oryza sativa osa-miR5152-3p mature miRNA
Sequence 184 - AGACCAUGCCUAUACCUACCA - 204
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21525786
    Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
    "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
    "RNA Biol (2011) 8:538-547

  2. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207