Stem-loop sequence mmu-mir-5134

Accession

MI0018046 (change log)

Symbol

MGI:Mir5134

Description

Mus musculus miR-5134 stem-loop

Stem-loop

   u   cag     g     --     - g      -u   ug 
5'  gaa   acuug cagaa  agggc a cuguga  gcu  u
    |||   ||||| |||||  ||||| | ||||||  |||   
3'  cuu   uggac gucuu  ucccg u ggcacu  uga  c
   -   aca     -     uc     g g      uu   uc 

Deep sequencing

220 reads, 2.22 reads per million, 45 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 24234527-24234604 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000115390 ; Ccnf-201; exon 10

Clustered miRNAs

< 10kb from mmu-mir-5134

• mmu-mir-6965: chr17: 24240884-24240947 [-]
• mmu-mir-5134: chr17: 24234527-24234604 [-]

Database links

• EntrezGene:Mir5134
• MGI:Mir5134
• RNAcentral:URS000075C2C9_10090
• miRBase Tracker:MI0018046

Mature sequence mmu-miR-5134-5p

• Accession: MIMAT0020645
• Previous IDs: mmu-miR-5134
• Sequence: 10 - uuggcagaaagggcagcugug - 30
• Deep sequencing: 104 reads, 35 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000370241_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5134-5p
  • miRDB:mmu-miR-5134-5p

Mature sequence mmu-miR-5134-3p

• Accession: MIMAT0022989
• Sequence: 49 - acggguggcccucuuucugcag - 70
• Deep sequencing: 113 reads, 37 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00005EA555_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5134-3p
  • miRDB:mmu-miR-5134-3p

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).