Stem-loop sequence mmu-mir-5132

Accession

MI0018044 (change log)

Symbol

MGI:Mir5132

Description

Mus musculus miR-5132 stem-loop

Gene family

MIPF0002061; mir-5132

Literature search

3 open access papers mention mmu-mir-5132
(5 sentences)

Stem-loop

   c      gc         u    -         ug 
5'  aggccg  guggggugg ggac ucaggcuuc  g
    ||||||  ||||||||| |||| |||||||||  a
3'  uccggc  cgcccuacc cuug aguccgaag  g
   -      ga         c    u         uc 

Deep sequencing

800 reads, 3.9 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 74023528-74023598 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000043840 ; Irak1-002; exon 1

  OTTMUST00000045163 ; Irak1-007; exon 1

  OTTMUST00000042885 ; Irak1-001; exon 2

  OTTMUST00000043842 ; Irak1-004; exon 2

  OTTMUST00000045161 ; Irak1-005; exon 2

  OTTMUST00000045162 ; Irak1-006; exon 2

  OTTMUST00000043841 ; Irak1-003; exon 2

  OTTMUST00000045164 ; Irak1-008; exon 2

  OTTMUST00000045165 ; Irak1-009; exon 2

  OTTMUST00000045169 ; Irak1-013; exon 2

  OTTMUST00000045168 ; Irak1-012; exon 2

  OTTMUST00000045167 ; Irak1-011; exon 2

  ENSMUST00000148706 ; Irak1-002; exon 1

  ENSMUST00000149871 ; Irak1-007; exon 1

  ENSMUST00000114354 ; Irak1-001; exon 2

  ENSMUST00000114352 ; Irak1-004; exon 2

  ENSMUST00000068286 ; Irak1-005; exon 2

  ENSMUST00000114360 ; Irak1-006; exon 2

  ENSMUST00000033769 ; Irak1-003; exon 2

  ENSMUST00000114353 ; Irak1-008; exon 2

  ENSMUST00000101458 ; Irak1-009; exon 2

  ENSMUST00000149809 ; Irak1-013; exon 2

  ENSMUST00000145677 ; Irak1-012; exon 2

  ENSMUST00000128759 ; Irak1-011; exon 2

Clustered miRNAs

< 10kb from mmu-mir-5132

• mmu-mir-718: chrX: 74023849-74023936 [-]
• mmu-mir-5132: chrX: 74023528-74023598 [-]

Database links

• EntrezGene:Mir5132
• MGI:Mir5132
• RNAcentral:URS000075EABF_10090
• miRBase Tracker:MI0018044

Mature sequence mmu-miR-5132-5p

• Accession: MIMAT0020643
• Previous IDs: mmu-miR-5132
• Sequence: 8 - gcguggggugguggacucagg - 28
• Deep sequencing: 677 reads, 68 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004AAE90_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5132-5p
  • miRDB:mmu-miR-5132-5p

Mature sequence mmu-miR-5132-3p

• Accession: MIMAT0022988
• Sequence: 45 - cugauguuccccaucccgcag - 65
• Deep sequencing: 117 reads, 46 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00004EB702_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5132-3p
  • miRDB:mmu-miR-5132-3p

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).