Stem-loop sequence mmu-mir-5128

Accession

MI0018040 (change log)

Symbol

MGI:Mir5128

Description

Mus musculus miR-5128 stem-loop

Literature search

4 open access papers mention mmu-mir-5128
(7 sentences)

Stem-loop

   u             --     u        u   u    aau 
5'  cuuaauuacugag  gucuu cuagcucc guu uacu   u
    |||||||||||||  ||||| |||||||| ||| ||||   u
3'  gaauuggugauuc  uagag ggucgggg uaa guga   a
   -             gg     c        u   c    aaa 

Deep sequencing

51234 reads, 384 reads per million, 106 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 37688201-37688284 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000030168 ; Strbp-001; intron 1

  OTTMUST00000030169 ; Strbp-002; intron 1

  OTTMUST00000030339 ; Strbp-005; intron 1

  OTTMUST00000030338 ; Strbp-004; intron 1

  ENSMUST00000072186 ; Strbp-001; intron 1

  ENSMUST00000135488 ; Strbp-002; intron 1

  ENSMUST00000155237 ; Strbp-005; intron 1

  ENSMUST00000144206 ; Strbp-004; intron 1

Database links

• EntrezGene:Mir5128
• MGI:Mir5128
• RNAcentral:URS000075ACAE_10090
• miRBase Tracker:MI0018040

Mature sequence mmu-miR-5128

• Accession: MIMAT0020639
• Sequence: 51 - caauuggggcuggcgagauggcu - 73
• Deep sequencing: 51091 reads, 98 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004670D7_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5128
  • miRDB:mmu-miR-5128

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).