Stem-loop sequence mmu-mir-5126

Accession

MI0018038 (change log)

Symbol

MGI:Mir5126

Description

Mus musculus miR-5126 stem-loop

Literature search

2 open access papers mention mmu-mir-5126
(2 sentences)

Stem-loop

   -   a  gga       u  --a   -    ga     u    
5'  ggg cc   cgccucc gc   gcu gcgg  gcccg ggu 
    ||| ||   ||||||| ||   ||| ||||  ||||| || u
3'  ccc gg   gcggggg cg   cgg cgcc  cgggc ccc 
   a   -  --g       c  ggg   g    aa     -    

Deep sequencing

4627 reads, 0 reads per million, 81 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr1: 84695839-84695915 [+]
• Overlapping transcripts:

  antisense

  ENSMUST00000049126 ; Dner-201; 5'UTR (exon 1)

Database links

• EntrezGene:Mir5126
• MGI:Mir5126
• RNAcentral:URS0000759AEF_10090
• miRBase Tracker:MI0018038

Mature sequence mmu-miR-5126

• Accession: MIMAT0020637
• Sequence: 52 - gcgggcggggccgggggcgggg - 73
• Deep sequencing: 4619 reads, 80 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000016B496_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5126
  • miRDB:mmu-miR-5126

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).