Stem-loop sequence mmu-mir-3572

Accession

MI0018037 (change log)

Symbol

MGI:Mir3572

Description

Mus musculus miR-3572 stem-loop

Gene family

MIPF0001244; mir-3572

Stem-loop

   -    -------           --c        -        ua  u 
5'  gacc       aguuuggggaa   agggcaag guggacag  gc g
    ||||       |||||||||||   |||||||| ||||||||  || a
3'  uugg       ucggaccccuu   uccuguuc cauuuguc  cg c
   g    cuugaua           ucu        a        --  a 

Deep sequencing

525 reads, 95.7 reads per million, 70 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 3655962-3656047 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000069068 ; Cnot3-003; exon 7

  OTTMUST00000069066 ; Cnot3-001; exon 11

  OTTMUST00000069067 ; Cnot3-002; 3'UTR (exon 12)

  ENSMUST00000135977 ; Cnot3-003; exon 7

  ENSMUST00000143085 ; Cnot3-001; exon 11

  ENSMUST00000038913 ; Cnot3-002; 3'UTR (exon 12)

Database links

• EntrezGene:Mir3572
• MGI:Mir3572
• RNAcentral:URS000075E0B7_10090
• miRBase Tracker:MI0018037

Mature sequence mmu-miR-3572-5p

• Accession: MIMAT0022986
• Sequence: 9 - uggggaacagggcaagguggac - 30
• Deep sequencing: 310 reads, 54 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00000430E8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3572-5p
  • miRDB:mmu-miR-3572-5p

Mature sequence mmu-miR-3572-3p

• Accession: MIMAT0020636
• Previous IDs: mmu-miR-3572
• Sequence: 49 - uacacuuguccuucuuuccccag - 71
• Deep sequencing: 168 reads, 51 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000CDDC0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3572-3p
  • miRDB:mmu-miR-3572-3p

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).