Stem-loop sequence mmu-mir-5124a

Accession

MI0018035 (change log)

Previous IDs

mmu-mir-5124

Symbol

MGI:Mir5124a

Description

Mus musculus miR-5124 stem-loop

Stem-loop

   -      -----gg       ag  a u       uuug 
5'  uagaaa       ugggucc  ug c aagagca    a
    ||||||       |||||||  || | |||||||     
3'  aucuuu       acccagg  ac g uucuugu    g
   g      aacuuga       ag  - -       ucac 

Deep sequencing

135 reads, 38.9 reads per million, 54 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr13: 40865791-40865862 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000110191 ; Gcnt2-203; intron 1

Database links

• EntrezGene:Mir5124
• MGI:Mir5124a
• miRBase Tracker:MI0018035

Mature sequence mmu-miR-5124a

• Accession: MIMAT0020634
• Previous IDs: mmu-miR-5124
• Sequence: 11 - gguccagugacuaagagcau - 30
• Deep sequencing: 45 reads, 28 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-5124a
  • miRDB:mmu-miR-5124a

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).