Stem-loop sequence mmu-mir-5121

Accession

MI0018030 (change log)

Symbol

MGI:Mir5121

Description

Mus musculus miR-5121 stem-loop

Literature search

1 open access papers mention mmu-mir-5121
(1 sentences)

Stem-loop

   g      u  u     --g  g   u  a ga     u 
5'  gugagu gg gaugu   gu aca gu g  caggg a
    |||||| || |||||   || ||| || |  |||||  
3'  uacuca cc cuaca   ua ugu cg c  gucuc g
   -      c  u     gag  g   u  a -g     g 

Deep sequencing

1066 reads, 0 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 45126918-45126991 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000039833 ; Rpl13a-004; intron 1

  OTTMUST00000039832 ; Rpl13a-003; intron 2

  OTTMUST00000039836 ; Rpl13a-007; intron 2

  OTTMUST00000039830 ; Rpl13a-001; intron 4

  OTTMUST00000042676 ; Rpl13a-010; intron 4

  OTTMUST00000039839 ; Rpl13a-009; intron 4

  OTTMUST00000039835 ; Rpl13a-006; intron 4

  OTTMUST00000039831 ; Rpl13a-002; intron 4

  OTTMUST00000039834 ; Rpl13a-005; exon 4

  OTTMUST00000083900 ; Rpl13a-011; intron 9

  ENSMUST00000135681 ; Rpl13a-004; intron 1

  ENSMUST00000083694 ; Snord33-201; exon 1

  ENSMUST00000152970 ; Rpl13a-003; intron 2

  ENSMUST00000138887 ; Rpl13a-007; intron 2

  ENSMUST00000150350 ; Rpl13a-001; intron 4

  ENSMUST00000142239 ; Rpl13a-010; intron 4

  ENSMUST00000102669 ; Rpl13a-009; intron 4

  ENSMUST00000125074 ; Rpl13a-006; intron 4

  ENSMUST00000141807 ; Rpl13a-002; intron 4

  ENSMUST00000131697 ; Rpl13a-005; exon 4

  ENSMUST00000124300 ; Rpl13a-011; intron 9

Clustered miRNAs

< 10kb from mmu-mir-5121

• mmu-mir-5121: chr7: 45126918-45126991 [-]
• mmu-mir-150: chr7: 45121757-45121821 [+]

Database links

• EntrezGene:Mir5121
• MGI:Mir5121
• RNAcentral:URS000075E7C2_10090
• miRBase Tracker:MI0018030

Mature sequence mmu-miR-5121

• Accession: MIMAT0020629
• Sequence: 47 - agcuugugaugagacaucucc - 67
• Deep sequencing: 1056 reads, 76 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002975EE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5121
  • miRDB:mmu-miR-5121

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).