Stem-loop sequence mmu-mir-5118

Accession

MI0018027 (change log)

Symbol

MGI:Mir5118

Description

Mus musculus miR-5118 stem-loop

Stem-loop

   -   a      ag        -      --cu  u 
5'  cuu ggaggc  agguuggc ugaucu    gc u
    ||| ||||||  |||||||| ||||||    ||  
3'  gaa ccucug  uccgaccg auugga    ug g
   a   a      -g        g      agcu  a 

Deep sequencing

219 reads, 27.1 reads per million, 48 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr16: 55494731-55494797 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir5118
• MGI:Mir5118
• miRBase Tracker:MI0018027

Mature sequence mmu-miR-5118

• Accession: MIMAT0020626
• Sequence: 40 - aagguuaggccagccuggu - 58
• Deep sequencing: 147 reads, 35 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-5118
  • miRDB:mmu-miR-5118

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).