Stem-loop sequence mmu-mir-5114

Accession

MI0018023 (change log)

Symbol

MGI:Mir5114

Description

Mus musculus miR-5114 stem-loop

Literature search

1 open access papers mention mmu-mir-5114
(2 sentences)

Stem-loop

   --a      a   a          g -g  u 
5'    cuggag cgg agcugcaaga c  gc g
      |||||| ||| |||||||||| |  || a
3'    gaccuu guc uugacguucu g  ug g
   gaa      -   c          g gg  u 

Deep sequencing

13863 reads, 16 reads per million, 75 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 44303171-44303231 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000026221 ; Scd2-201; exon 6

Database links

• EntrezGene:Mir5114
• MGI:Mir5114
• RNAcentral:URS000075A15D_10090
• miRBase Tracker:MI0018023

Mature sequence mmu-miR-5114

• Accession: MIMAT0020622
• Sequence: 1 - acuggagacggaagcugcaaga - 22
• Deep sequencing: 13778 reads, 62 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000396FDF_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5114
  • miRDB:mmu-miR-5114

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).