Stem-loop sequence mmu-mir-5108

Accession

MI0018017 (change log)

Symbol

MGI:Mir5108

Description

Mus musculus miR-5108 stem-loop

Stem-loop

   ---ca u      -    c      --      ----    u   ug 
5'      g gaagcu ucca uguucu  uaccau    uccc cug  g
        | |||||| |||| ||||||  ||||||    |||| |||   
3'      c cuuugg aggu acgaga  guggua    aggg ggc  c
   aguaa u      u    c      ug      accc    -   uc 

Deep sequencing

115 reads, 0 reads per million, 22 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr10: 61774737-61774821 [+]
• Overlapping transcripts:

  antisense

  OTTMUST00000086324 ; H2afy2-001; intron 1

  ENSMUST00000020283 ; H2afy2-001; intron 1

Database links

• EntrezGene:Mir5108
• MGI:Mir5108
• miRBase Tracker:MI0018017

Mature sequence mmu-miR-5108

• Accession: MIMAT0020616
• Sequence: 59 - guagagcacuggaugguuu - 77
• Deep sequencing: 105 reads, 21 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-5108
  • miRDB:mmu-miR-5108

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).