Stem-loop sequence mmu-mir-5107

Accession

MI0018016 (change log)

Symbol

MGI:Mir5107

Description

Mus musculus miR-5107 stem-loop

Literature search

3 open access papers mention mmu-mir-5107
(6 sentences)

Stem-loop

   -  -  a a  -     c       -     -gaca   aa    u 
5'  uc ca g ug uuggg agaggag gcagg     aca  cugg g
    || || | || ||||| ||||||| |||||     |||  ||||  
3'  ag gu c ac gaccc ucucuuc ugucc     ugu  gacc g
   a  u  c c  u     u       g     aacua   -c    c 

Deep sequencing

6502 reads, 9.09 reads per million, 44 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr18: 60812076-60812163 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000050487 ; Cd74-201; exon 8

  ENSMUST00000097563 ; Cd74-202; exon 9

  ENSMUST00000167610 ; Cd74-203; exon 9

Database links

• EntrezGene:Mir5107
• MGI:Mir5107
• RNAcentral:URS000075B11F_10090
• miRBase Tracker:MI0018016

Mature sequence mmu-miR-5107-5p

• Accession: MIMAT0020615
• Previous IDs: mmu-miR-5107
• Sequence: 11 - ugggcagaggaggcagggaca - 31
• Deep sequencing: 6456 reads, 44 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003CBF98_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5107-5p
  • miRDB:mmu-miR-5107-5p

Mature sequence mmu-miR-5107-3p

• Accession: MIMAT0022985
• Sequence: 55 - caaccugugcuucucuucccag - 76
• Deep sequencing: 41 reads, 16 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001AC254_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5107-3p
  • miRDB:mmu-miR-5107-3p

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).