Stem-loop sequence mmu-mir-5099

Accession

MI0018007 (change log)

Symbol

MGI:Mir5099

Description

Mus musculus miR-5099 stem-loop

Literature search

6 open access papers mention mmu-mir-5099
(7 sentences)

Stem-loop

   -         uua  -a                -aa  g 
5'  agaauucag   ga  auuacauugauuuaag   gu g
    |||||||||   ||  ||||||||||||||||   ||  
3'  ucuugaguc   cu  ugguguagcuagauuc   ua u
   c         ---  cg                ggg  a 

Deep sequencing

226235 reads, 596 reads per million, 109 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 36816205-36816278 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir5099
• MGI:Mir5099
• RNAcentral:URS000075EFF2_10090
• miRBase Tracker:MI0018007

Mature sequence mmu-miR-5099

• Accession: MIMAT0020606
• Sequence: 46 - uuagaucgauguggugcucc - 65
• Deep sequencing: 226219 reads, 107 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000056F567_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5099
  • miRDB:mmu-miR-5099

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).