Stem-loop sequence ssc-mir-615

Accession

MI0017995 (change log)

Description

Sus scrofa miR-615 stem-loop

Gene family

MIPF0000342; mir-615

Literature search

1 open access papers mention ssc-mir-615
(1 sentences)

Stem-loop

   g  a    c         cuc     u        cu    g ug 
5'  gg gggg gggaggggg   cccgg gcucggau  cgag g  c
    || |||| |||||||||   ||||| ||||||||  |||| |  u
3'  cc cccc cccucuccc   ggguc cgagccug  gcuu u  u
   -  a    -         ucu     -        --    g ua 

Deep sequencing

22 reads, 0 reads per million, 6 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr5: 19690659-19690746 [-]	sense ENSSSCT00000031368 ; intron 1 ENSSSCT00000028782 ; intron 1
chr5: 20147919-20148006 [+]	sense ENSSSCT00000031368 ; intron 1 ENSSSCT00000028782 ; intron 1

Database links

• EntrezGene:MIR615
• miRBase Tracker:MI0017995

Mature sequence ssc-miR-615

• Accession: MIMAT0020595
• Sequence: 58 - uccgagccugggucucccucu - 78
• Deep sequencing: 20 reads, 5 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).