miRBase entry: bdi-MIR5067

Stem-loop bdi-MIR5067


Accession
MI0017967
Description
Brachypodium distachyon bdi-MIR5067 precursor miRNA
Gene family
MIPF0001200; MIR5067


Sequence

uacucccuccgauccauauuauuugccgcugauuuagugcaacuuuguacuaaaUCAGCGACAACUAAUAUGGAUaggagggagua
((((((((((.((((((((((.(((.(((((((((((((((....))))))))))))))).))).)))))))))).))))))))))

Structure
          g          u   c               a 
uacucccucc auccauauua uug cgcugauuuagugca c
|||||||||| |||||||||| ||| |||||||||||||||  
augagggagg UAGGUAUAAU AAC GCGACUaaaucaugu u
          a          C   A               u 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
1: 20615436-20615521 [+]

Database links

Mature bdi-miR5067

Accession MIMAT0020576
Description Brachypodium distachyon bdi-miR5067 mature miRNA
Sequence 55 - UCAGCGACAACUAAUAUGGAU - 75
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129