miRBase entry: bdi-MIR5066

Stem-loop bdi-MIR5066


Accession
MI0017964
Description
Brachypodium distachyon bdi-MIR5066 precursor miRNA


Sequence

cuuucuguugAAGUGUAUAAGUGGAGUGCCUagcccuuuccauuagaucggucuuuugguugcguuggcuagcgcaugaagcucuucacuuuuuagaagau
.((((((..((((((.(..(((...((((((((((....(((..(((....)))..))).......)))))).))))...)))..))))))).))))))..

Structure
-c      uu      U UA   GGA    -      ---cuuu   uu   u 
  uuucug  gAAGUG A  AGU   GUGC CUagcc       cca  aga c
  ||||||  |||||| |  |||   |||| ||||||       |||  |||  
  gaagau  uuucac u  ucg   uacg gaucgg       ggu  ucu g
ua      -u      - uc   aag    c      uugcguu   uu   g 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
1: 55649102-55649202 [-]

Database links

Mature bdi-miR5066

Accession MIMAT0020573
Description Brachypodium distachyon bdi-miR5066 mature miRNA
Sequence 11 - AAGUGUAUAAGUGGAGUGCCU - 31
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129