miRBase entry: hvu-MIR399

Stem-loop hvu-MIR399


Accession
MI0017933
Description
Hordeum vulgare hvu-MIR399 precursor miRNA

Literature search
9 open access papers mention hvu-MIR399
(248 sentences)

Sequence

ucagaagaacuagguagauuugccaaaggagauuugccgaacuauagguacuguagguagguuuugccaaaaggagauuugccccgaacuaucgguagguuUGCCAAAGGAGAUUUGCCCCGaagaacuua
............(((((((((.((...(((((((((((((......((.......((((((((((........))))))))))))......))))))))))).))...)))))))))))............

Structure
ucagaagaacua         g  aaa  -           acuaua  uacugua          gcc 
            gguagauuu cc   gg agauuugccga      gg       gguagguuuu   a
            ||||||||| ||   || |||||||||||      ||       ||||||||||    
            CCGUUUAGA GG   CC Uuuggauggcu      cc       ccguuuagag   a
auucaagaaGCC         -  AAA  G           aucaag  -------          gaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvu-miR399

Accession MIMAT0020542
Description Hordeum vulgare hvu-miR399 mature miRNA
Sequence 102 - UGCCAAAGGAGAUUUGCCCCG - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129