miRBase entry: gma-MIR5035

Stem-loop gma-MIR5035


Accession
MI0017908
Description
Glycine max gma-MIR5035 precursor miRNA


Sequence

aucagcuuaggcuugucuacugaaaaucauauaaacauauguaccuaccuauccuaugagCUUCUAAACAUUUUUUCCCUUAugccaaagaaaacaucuuuggcaugagggaaaaaaUGUUUAGAAGCUCAUAGAAUAGAUagguacauau
.((((..(((......))))))).............(((((((((((.((((.((((((((((((((((((((((((((((((((((((((.....)))))))))))))))))))))))))))))))))))))).)))).)))))))))))

Structure
aucagcuuaggcuugucuacugaaaaucauauaaac           c    c                                      a 
                                    auauguaccua cuau cuaugagCUUCUAAACAUUUUUUCCCUUAugccaaaga a
                                    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| a
                                    uauacauggaU GAUA GAUACUCGAAGAUUUGUaaaaaagggaguacgguuucu c
------------------------------------           A    A                                      a 


Annotation confidence Not enough data
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Genome context
chr7: 1959028-1959178 [+]

Database links

Mature gma-miR5035-5p

Accession MIMAT0021058
Description Glycine max gma-miR5035-5p mature miRNA
Sequence 61 - CUUCUAAACAUUUUUUCCCUUA - 82
Evidence experimental
SOLiD [1]

Mature gma-miR5035-3p

Accession MIMAT0032121
Description Glycine max gma-miR5035-3p mature miRNA
Sequence 118 - UGUUUAGAAGCUCAUAGAAUAGAU - 141
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153