miRBase entry: gma-MIR1523b

Stem-loop gma-MIR1523b


Accession
MI0017902
Description
Glycine max gma-MIR1523b precursor miRNA
Gene family
MIPF0001327; MIR1523

Literature search
1 open access papers mention gma-MIR1523b
(1 sentences)

Sequence

uagacucauuuugaaauaaaugugagcucgggaguaaugaggagugaugaaaggauuuauUCAUCGCUCCUGAGCUCACAuuuaucccauaauggguccuugacccuaauugauucaccaguagagggacaagcuucauguaaauaagcgu
..(((((((.((......)).))))).)).(((((...(((((.(.((....((((...........................))))....)).).)))))..((((.((((......))))..))))....)))))((((......))))

Structure
uagacucauuuugaaauaaaugugagcucg     ----------------------------aau     g g  gaaa    uuauUCAUCGCU 
                              ggagu                               gagga u au    ggau            C
                              |||||                               ||||| | ||    ||||            C
                              cuucg                               uuccu g ua    ccua            U
----------------ugcgaauaaaugua     aacagggagaugaccacuuaguuaaucccag     g g  auac    uuuACACUCGAG 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 12591024-12591174 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR1523b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR1523b

Accession MIMAT0021051
Description Glycine max gma-miR1523b mature miRNA
Sequence 61 - UCAUCGCUCCUGAGCUCACA - 80
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972